Looking for the heartbeat of cellular networks
In their work, the scientists investigated the hybridization – the coupling and de-coupling – of two DNA-strands, which they introduced into living cells. To determine the reaction time constant they used an infrared laser to induce temperature oscillations of different frequencies in the cell and measured the concentration of the reaction partners, namely of coupled and de-coupled DNA. At low frequencies, these concentrations followed the temperature oscillations, whereas at higher frequencies they experienced a phase delay and oscillated with diminished amplitude. Both delay time and amplitude decrease, were evaluated to obtain the reaction time constant.
The team determined the concentrations using the so-called fluorescent energy transfer (FRET), which takes place between two chromophores at a certain spatial distance. They applied a FRET pair to the DNA-strands such that energy transfer occurred only if the strands were coupled. The chromophores were excited with a stroboscopic lamp and a CCD camera registered time and amplitude of the fluorescence, thus visualizing the concentration alterations with a spatial resolution of about 500 nanometres. The experiments revealed that DNA-strands comprising 16 units, the so-called bases, showed a sevenfold higher reaction speed compared to values determined outside living cells.
12-base DNA-strands, on the other hand, reacted times five times slower than outside cells. This is a surprising result, since kinetics of molecular reactions has been assumed to be always faster inside cells, where much higher molecular concentrations prevail. “Apparently cells modulate the reaction speed in a highly selective way,” says Braun. “The measurements provide valuable insight into in vivo kinetic data for the systematic analysis of the complexity of biological cells,” adds Ingmar Schön, who conducted the demanding experiments. The scientists are now planning to probe a wide variety of molecular reactions in living cells, visualizing the heartbeat of cellular networks. (CR/suwe)
“Hybridization Kinetics is Different Inside Cells”
Ingmar Schoen, Hubert Krammer, Dieter Braun
PNAS online, 14 November 2009
Prof. Dieter Braun
Systems Biophysics, Center for NanoScience (CeNS) and Cluster of Excellence “Nanosystems Initiative Munich” (NIM), LMU Munich
Phone: +49 (0) 89 / 2180 – 2317